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n2p2 - A neural network potential package
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Angular symmetry function group (type 3) More...
#include <SymGrpExpAngn.h>


Public Member Functions | |
| SymGrpExpAngn (ElementMap const &elementMap) | |
| Constructor, sets type = 3. | |
| virtual bool | operator== (SymGrp const &rhs) const |
| Overload == operator. | |
| virtual bool | operator< (SymGrp const &rhs) const |
| Overload < operator. | |
| virtual bool | addMember (SymFnc const *const symmetryFunction) |
| Potentially add a member to group. | |
| virtual void | sortMembers () |
| Sort member symmetry functions. | |
| virtual void | calculate (Atom &atom, bool const derivatives) const |
| Calculate all symmetry functions of this group for one atom. | |
Public Member Functions inherited from nnp::SymGrpBaseExpAng | |
| virtual void | setScalingFactors () |
| Fill scalingFactors with values from member symmetry functions. | |
| virtual std::vector< std::string > | parameterLines () const |
| Give symmetry function group parameters on multiple lines. | |
Public Member Functions inherited from nnp::SymGrpBaseCutoff | |
| double | getRc () const |
| Get private rc member variable. | |
Public Member Functions inherited from nnp::SymGrp | |
| virtual | ~SymGrp () |
| Virtual destructor. | |
| bool | operator!= (SymGrp const &rhs) const |
| Overload != operator. | |
| bool | operator> (SymGrp const &rhs) const |
| Overload > operator. | |
| bool | operator<= (SymGrp const &rhs) const |
| Overload <= operator. | |
| bool | operator>= (SymGrp const &rhs) const |
| Overload >= operator. | |
| void | setIndex (std::size_t index) |
| Set private index member variable. | |
| std::size_t | getIndex () const |
| Get private index member variable. | |
| std::size_t | getType () const |
| Get private type member variable. | |
| std::size_t | getEc () const |
| Get private ec member variable. | |
Private Member Functions | |
| virtual std::vector< SymFncBaseExpAng const * > | getMembers () const |
| Get symmetry function members. | |
Private Attributes | |
| std::vector< SymFncExpAngn const * > | members |
| Vector of all group member pointers. | |
Additional Inherited Members | |
Protected Types inherited from nnp::SymGrp | |
| typedef std::map< std::string, std::pair< std::string, std::string > > | PrintFormat |
| typedef std::vector< std::string > | PrintOrder |
Protected Member Functions inherited from nnp::SymGrpBaseExpAng | |
| SymGrpBaseExpAng (std::size_t type, ElementMap const &elementMap) | |
| Constructor, sets type. | |
Protected Member Functions inherited from nnp::SymGrpBaseCutoff | |
| SymGrpBaseCutoff (std::size_t type, ElementMap const &elementMap) | |
| Constructor, sets type. | |
Protected Member Functions inherited from nnp::SymGrp | |
| SymGrp (std::size_t type, ElementMap const &elementMap) | |
| Constructor, sets type. | |
| std::string | getPrintFormatCommon () const |
| Get common parameter line format string. | |
| std::string | getPrintFormatMember () const |
| Get member parameter line format string. | |
Static Protected Member Functions inherited from nnp::SymGrp | |
| static PrintFormat const | initializePrintFormat () |
| Initialize static print format map for all possible parameters. | |
| static PrintOrder const | initializePrintOrder () |
| Initialize static print order vector for all possible parameters. | |
Protected Attributes inherited from nnp::SymGrpBaseExpAng | |
| std::size_t | e1 |
| Element index of neighbor atom 1 (common feature). | |
| std::size_t | e2 |
| Element index of neighbor atom 2 (common feature). | |
| std::vector< bool > | calculateExp |
| Vector indicating whether exponential term needs to be calculated. | |
| std::vector< double > | factorNorm |
| Vector containing precalculated normalizing factor for each zeta. | |
| std::vector< double > | factorDeriv |
| Vector containing precalculated normalizing factor for derivatives. | |
| std::vector< bool > | useIntegerPow |
| Vector containing values of all member symmetry functions. | |
| std::vector< int > | zetaInt |
| Vector containing values of all member symmetry functions. | |
| std::vector< double > | eta |
| Vector containing values of all member symmetry functions. | |
| std::vector< double > | zeta |
| Vector containing values of all member symmetry functions. | |
| std::vector< double > | lambda |
| Vector containing values of all member symmetry functions. | |
| std::vector< double > | zetaLambda |
| Vector containing values of all member symmetry functions. | |
| std::vector< double > | rs |
| Vector containing values of all member symmetry functions. | |
Protected Attributes inherited from nnp::SymGrpBaseCutoff | |
| double | rc |
| Cutoff radius \(r_c\) (common feature). | |
| double | cutoffAlpha |
| Cutoff function parameter \(\alpha\) (common feature). | |
| std::string | subtype |
| Subtype string (specifies cutoff type) (common feature). | |
| CutoffFunction | fc |
| Cutoff function used by this symmetry function group. | |
| CutoffFunction::CutoffType | cutoffType |
| Cutoff type used by this symmetry function group (common feature). | |
Protected Attributes inherited from nnp::SymGrp | |
| std::size_t | type |
| Symmetry function type. | |
| ElementMap | elementMap |
| Copy of element map. | |
| std::size_t | index |
| Symmetry function group index. | |
| std::size_t | ec |
| Element index of center atom (common feature). | |
| double | convLength |
| Data set normalization length conversion factor. | |
| std::vector< size_t > | memberIndex |
| Vector containing indices of all member symmetry functions. | |
| std::vector< double > | scalingFactors |
| Scaling factors of all member symmetry functions. | |
| std::set< std::string > | parametersCommon |
| Set of common parameters IDs. | |
| std::set< std::string > | parametersMember |
| Set of common parameters IDs. | |
| std::vector< std::vector< std::size_t > > | memberIndexPerElement |
| Vector containing per-element indices of all member symmetry functions. | |
Static Protected Attributes inherited from nnp::SymGrp | |
| static PrintFormat const | printFormat = initializePrintFormat() |
| Map of parameter format strings and empty strings. | |
| static PrintOrder const | printOrder = initializePrintOrder() |
| Vector of parameters in order of printing. | |
Angular symmetry function group (type 3)
\[G^3_i = 2^{1-\zeta} \sum_{\substack{j,k\neq i \\ j < k}} \left( 1 + \lambda \cos \theta_{ijk} \right)^\zeta \mathrm{e}^{-\eta( (r_{ij}-r_s)^2 + (r_{ik}-r_s)^2 + (r_{jk}-r_s)^2 ) } f_c(r_{ij}) f_c(r_{ik}) f_c(r_{jk}) \]
Common features:
Definition at line 50 of file SymGrpExpAngn.h.
| SymGrpExpAngn::SymGrpExpAngn | ( | ElementMap const & | elementMap | ) |
Constructor, sets type = 3.
Definition at line 30 of file SymGrpExpAngn.cpp.
References nnp::SymGrp::elementMap, and nnp::SymGrpBaseExpAng::SymGrpBaseExpAng().
Referenced by operator<(), and operator==().


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virtual |
Overload == operator.
Implements nnp::SymGrp.
Definition at line 35 of file SymGrpExpAngn.cpp.
References nnp::SymGrpBaseCutoff::cutoffAlpha, nnp::SymGrpBaseCutoff::cutoffType, nnp::SymGrpBaseExpAng::e1, nnp::SymGrpBaseExpAng::e2, nnp::SymGrp::ec, nnp::SymGrp::getEc(), nnp::SymGrp::getType(), nnp::SymGrpBaseCutoff::rc, SymGrpExpAngn(), and nnp::SymGrp::type.

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virtual |
Overload < operator.
Implements nnp::SymGrp.
Definition at line 48 of file SymGrpExpAngn.cpp.
References nnp::SymGrpBaseCutoff::cutoffAlpha, nnp::SymGrpBaseCutoff::cutoffType, nnp::SymGrpBaseExpAng::e1, nnp::SymGrpBaseExpAng::e2, nnp::SymGrp::ec, nnp::SymGrp::getEc(), nnp::SymGrp::getType(), nnp::SymGrpBaseCutoff::rc, SymGrpExpAngn(), and nnp::SymGrp::type.

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virtual |
Potentially add a member to group.
| [in] | symmetryFunction | Candidate symmetry function. |
If symmetry function is compatible with common feature list its pointer will be added to members.
Implements nnp::SymGrp.
Definition at line 68 of file SymGrpExpAngn.cpp.
References nnp::SymGrp::convLength, nnp::SymGrpBaseCutoff::cutoffAlpha, nnp::SymGrpBaseCutoff::cutoffType, nnp::SymGrpBaseExpAng::e1, nnp::SymGrpBaseExpAng::e2, nnp::SymGrp::ec, nnp::SymGrpBaseCutoff::fc, nnp::SymFnc::getConvLength(), nnp::SymFncBaseCutoff::getCutoffAlpha(), nnp::SymFncBaseCutoff::getCutoffType(), nnp::SymFncBaseExpAng::getE1(), nnp::SymFncBaseExpAng::getE2(), nnp::SymFnc::getEc(), nnp::SymFnc::getRc(), nnp::SymFncBaseCutoff::getSubtype(), nnp::SymFnc::getType(), members, nnp::SymGrpBaseCutoff::rc, nnp::SymGrpBaseCutoff::subtype, and nnp::SymGrp::type.

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virtual |
Sort member symmetry functions.
Also allocate and precalculate additional stuff.
Implements nnp::SymGrp.
Definition at line 108 of file SymGrpExpAngn.cpp.
References nnp::SymGrpBaseExpAng::calculateExp, nnp::comparePointerTargets(), nnp::SymGrpBaseExpAng::eta, nnp::SymGrpBaseExpAng::factorDeriv, nnp::SymGrpBaseExpAng::factorNorm, nnp::SymGrp::getIndex(), nnp::SymGrpBaseExpAng::lambda, nnp::SymGrp::memberIndex, nnp::SymGrp::memberIndexPerElement, members, nnp::SymGrpBaseExpAng::rs, nnp::SymGrpBaseExpAng::useIntegerPow, nnp::SymGrpBaseExpAng::zeta, nnp::SymGrpBaseExpAng::zetaInt, and nnp::SymGrpBaseExpAng::zetaLambda.

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virtual |
Calculate all symmetry functions of this group for one atom.
| [in,out] | atom | Atom for which symmetry functions are caluclated. |
| [in] | derivatives | If also symmetry function derivatives will be calculated and saved. |
Implements nnp::SymGrp.
Definition at line 156 of file SymGrpExpAngn.cpp.
References nnp::Atom::Neighbor::cache, nnp::SymGrpBaseExpAng::calculateExp, nnp::Atom::Neighbor::d, nnp::Atom::dGdr, nnp::Atom::Neighbor::dGdr, nnp::Atom::Neighbor::dr, nnp::SymGrpBaseExpAng::e1, nnp::SymGrpBaseExpAng::e2, nnp::Atom::Neighbor::element, nnp::SymGrpBaseExpAng::eta, nnp::SymGrpBaseExpAng::factorDeriv, nnp::SymGrpBaseExpAng::factorNorm, nnp::SymGrpBaseCutoff::fc, nnp::Atom::G, nnp::Atom::getStoredMinNumNeighbors(), nnp::SymGrpBaseExpAng::lambda, nnp::SymGrp::memberIndex, nnp::SymGrp::memberIndexPerElement, members, nnp::Atom::neighbors, nnp::pow_int(), nnp::Vec3D::r, nnp::SymGrpBaseCutoff::rc, nnp::SymGrpBaseExpAng::rs, nnp::SymGrp::scalingFactors, nnp::SymGrpBaseExpAng::useIntegerPow, nnp::SymGrpBaseExpAng::zeta, nnp::SymGrpBaseExpAng::zetaInt, and nnp::SymGrpBaseExpAng::zetaLambda.

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inlineprivatevirtual |
Get symmetry function members.
Implements nnp::SymGrpBaseExpAng.
Definition at line 95 of file SymGrpExpAngn.h.
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private |
Vector of all group member pointers.
Definition at line 92 of file SymGrpExpAngn.h.
Referenced by addMember(), calculate(), getMembers(), and sortMembers().